Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015885587.1_cds_XP_016439611.1_35150
CDS Infomation

[gene=LOC107765470] [db_xref=GeneID:107765470] [protein=probable E3 ubiquitin-protein ligase ARI2] [protein_id=XP_016439611.1] [location=complement(join(9864..10009,11499..11665,11738..12286,13695..14175,14536..14818,14921..14953,17541..17654))] [gbkey=CDS]
Sequence

ATGGAGGATTACCTGAGCGGCGATGAAGATATATATTCTTCTGATCAAGAAGAAGGACTC
GAGAATGAGGAGTCTGATTCCCGGTGGGCCTCTTCTACAGGAAATTCCTGCAAGGTAATC
ACAAGGGAGTCTCTCTTGGTGGCACAGAGGGAGGAGTTGCGGAGAGTGATGGACTTGCTC
TCACTAAGAGAACACCATGCGAGATCCTTGCTTATTCACTACCGTTGGGATCTCGAGAGG
TTGTTTGCGGTTCTTGTAGAAAAGGGAAAAGCTTGCTTATTTGCTGAAGCAGGGGTAACT
GTGCTTGAAGAAGTTGATTTTGGATCATCTGTGTCTTCTTCTTCGACTGTGATGTGCAAT
ATATGCATAGAAGAGGTAGCGGGGAGTGATGTCACAAAAATGGACTGTGGTCACTGCTTC
TGCAATGAATGTTGGACAGAGCATTTCATTGTGAAAATAAAGGAGGGGCAGAGTAAGAGA
ATAAGGTGCCTGGCTCATAAATGCTTTGCAATTTGTGATGAAGCCGTTATCAGAAAGCTC
GTTAGTAAAAGGCATCCGGATTTGGCAGAGAAATTTGATCGGTTTCTCCTTGAATCATAC
ATTGAGGACAATAAAATGGTGAAATGGTGTCCAAGTATCCCTCACTGTGGGAATGCTATA
CGGCTAGAGACTGATGATCTTTGTGAAGTAGAATGTTCATGTGGTTTACAGTTCTGTTTC
AGTTGCTTATCAGAAGCACATTCACCTTGTTCTTGCTTGATGTGGGAACTTTGGACCAAG
AAGTGCCGAGATGAATCAGAGACAGTTAATTGGATTACAGTTCACACTAAGCCTTGTCCA
AAGTGTCACAAACCCGTTGAGAAGAATGGAGGTTGCAACCTAGTTAGCTGCATTTGTGGG
CAAGCATTTTGTTGGCTATGTGGTGGAGCTACTGGCCGAGATCATACTTGGTCGCATATC
ACTGGTCACAGTTGTGGTCGTTATAAGGAAGATCAGGAGAAGAAAGCTGAACGTGCTAAG
CGTGATCTTTATCGCTACATGCATTATCACAATCGTTATAAAGCTCATACAGATTCTTCT
ACACAGGAGTCTCGTCTGAGGGATACTATAAAAGAAAAGGTGGCAATTTTGGAAGCAAAG
GAGTCAATAGTGAAAGATTTTAGTTGGATTACAAATGGACTTTACAGGCTTTCCAGATCA
AGACGGGCTCTCTCGTTTTCATACCCATTTGCGTATTATATGTTTGGTGATGACTTATTT
AAGGATGAAATGACAAAAGAAGAAAAGGAAATAAAGCAGCATTTATTTGAGGACCAGCAG
CAGCAGCTTGAGGCAAATATTGAAAAGCTATCAAAAGCTTTTGAGGATCCATTTGATGAT
TTCAAAGCGGAAGAGATTACGGAAATGAGGATGCAAGTTATAAATCTCTCTGTGGTAACT
GATACATTATGTAAGAAGATGTATGAATGCATCGAGACTGATTTATTGGGACCTCTAAAG
TTCAGTTGTGCAAATATAGCTCCATACAAGTCAAAGGGCATTGAGAGAGCAACAGAGCTT
AATGGAGGACAGAGCACCAAAGCAAACAACAATATTACATGTCAAAAAGCTCATGACCAG
ACAAATGGAGGTTCCATAGAATTGGTTCAGCCATCAGGTTCTGGGACTTCAGATGACAGT
GGATGCTCTTCAAGGAAGCGTCGAAGAATAGAGAATTCAGGTGGTGGTTTTTTCGATCTA
AACTTGCCTGCCGAGCTCATTGATAGGAACTAA

Peptide Sequence

PEP ID

XP_016439611.1
PEP Infomation

PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Nicotiana tabacum]
Sequence

MEDYLSGDEDIYSSDQEEGLENEESDSRWASSTGNSCKVITRESLLVAQREELRRVMDLL
SLREHHARSLLIHYRWDLERLFAVLVEKGKACLFAEAGVTVLEEVDFGSSVSSSSTVMCN
ICIEEVAGSDVTKMDCGHCFCNECWTEHFIVKIKEGQSKRIRCLAHKCFAICDEAVIRKL
VSKRHPDLAEKFDRFLLESYIEDNKMVKWCPSIPHCGNAIRLETDDLCEVECSCGLQFCF
SCLSEAHSPCSCLMWELWTKKCRDESETVNWITVHTKPCPKCHKPVEKNGGCNLVSCICG
QAFCWLCGGATGRDHTWSHITGHSCGRYKEDQEKKAERAKRDLYRYMHYHNRYKAHTDSS
TQESRLRDTIKEKVAILEAKESIVKDFSWITNGLYRLSRSRRALSFSYPFAYYMFGDDLF
KDEMTKEEKEIKQHLFEDQQQQLEANIEKLSKAFEDPFDDFKAEEITEMRMQVINLSVVT
DTLCKKMYECIETDLLGPLKFSCANIAPYKSKGIERATELNGGQSTKANNNITCQKAHDQ
TNGGSIELVQPSGSGTSDDSGCSSRKRRRIENSGGGFFDLNLPAELIDRN

Transcript Sequence

Gene sequence data has not been registered.